Thursday, December 4, 2008

Bioinfomatic in web2.0

DNASIS SmartNote is an on-line service for bioinformatic analysis integration, currently it's like Google Docs but specific for bioinformatic, it looks good and very expandable, it includes some basic tools:

Similarity
  • Blast - NCBI
Statistics
  • Codon Usage
  • CpG Islands
  • DNA Stats
  • Hetero Dimer - IDT Oligo Analyzer
  • Oligo Analyzer - IDT
  • PCR Primer Stats
  • Protein Stats
Translation/complement
  • Reverse Complement
  • Reverse Translation
  • Translate Tool - ExPASy
Alignment
  • ClustalW - EBI
  • Multiple Alignment Editor - Jalview
  • MUSCLE - EBI
  • Pairwise Alignment - EBI EMBOSS
  • T-Coffee - EBI
Annotations/search
  • Blast - NCBI
  • CpG Islands
  • DNA Pattern Find
  • Fuzzy DNA Search
  • Fuzzy Protein Search
  • Neural Network Promoter Prediction
  • ORF Finder
  • Primer Map
  • Protein Pattern Find
  • Restriction Digest
  • Restriction Map
  • TMHMM Server v. 2.0
  • VecScreen - DDBJ
  • xTAG Software
Primers
  • ASPE - Probe Design Tool for ASPE
  • Hetero Dimer - IDT Oligo Analyzer
  • Oligo Analyzer - IDT
  • PCR Primer Stats
  • Primer Map
  • Primer3
  • PrimerX
  • siRNA Design - DEQOR
Check the video for a demo.

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